Each PRECASTObj object has a number of slots which store information.

Each PRECASTObj object has a number of slots which store information. Key slots to access are listed below.

Slots

seuList

A list with Seurat object as component, representing the raw expression count matrix, spatial coordinates and meta data for each data batch, where the spatial coordinates information is saved in the metadata of Seurat, named "row" and "col" for eahc data batch.

seulist

A Seurat list after the preprocessing step in preparation for PRECAST model.

AdjList

The adjacency matrix list for a PRECASTObj object.

parameterList

The model parameter settings for a PRECASTObj object

resList

The results after fitting PRECAST models.

project

Name of the project.