All functions

AddParSettingFAST()

Add FAST model settings for a PRECASTObj object

FAST()

Run FAST model for a PRECASTObj object

FAST_run()

(Varitional) ICM-EM algorithm for implementing FAST model

FAST_structure()

(Varitional) ICM-EM algorithm for implementing FAST model with structurized parameters

get_r2_mcfadden()

Calcuate the the adjusted McFadden's pseudo R-square

IntegrateSRTData()

Integrate multiple SRT data into a Seurat object

iscmeb_run()

Fit an iSC-MEB model using specified multi-section embeddings

model_set_FAST()

Set parameters for FAST model

rcpparma_hello_world() rcpparma_outerproduct() rcpparma_innerproduct() rcpparma_bothproducts()

Set of functions in example RcppArmadillo package

RunHarmonyLouvain()

Embedding alignment and clustering based on the embeddings from FAST

RuniSCMEB()

Fit an iSC-MEB model using the embeddings from FAST

SelectHKgenes()

Select housekeeping genes

transferGeneNames()

Transfer gene names from one fortmat to the other format