A Seurat object including spatial transcriptomics dataset from CosMx platform

This data is a subset of SCLC CosMx spatial transcriptomics dataset.

data(CosMx_subset)

Format

A Seurat object, including count matrix, sptial coordinates, and manual annotation.

Source

The data is from the CosMx SRT sequencing platform.

References

None

Examples

  # Show some examples of how to use the dataset.  
  data(CosMx_subset)  
  library(Seurat)
  CosMx_subset
#> An object of class Seurat 
#> 960 features across 2814 samples within 1 assay 
#> Active assay: RNA (960 features, 960 variable features)