Select housekeeping genes

Source: R/main.R

Select housekeeping genes for preparation of removing unwanted variations in expression matrices

SelectHKgenes(seuList, species = c("Human", "Mouse"), HK.number = 200)

Arguments

seuList

an M-length list consisting of Seurat object, include the information of expression matrix and spatial coordinates (named row and col) in the slot meta.data.

species

a string, the species, one of 'Human' and 'Mouse'.

HK.number

an optional integer, specify the number of housekeeping genes to be selected.

Value

Return a string vector of the selected gene names.